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gtaagtaatcccctaccgccacttttgtgagtcgtcttatgaattctttcctgtgccaaaataatcagaaaatctactctgatgatttgagcagggttcttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCT ACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAGEST: gi|71311178|gb|DR791899.1|DR791899
genomic: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCTgtaagtaatc ... ttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
EST: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCT ACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGTTTTGCCAGEST: gi|67026824|gb|CO455573.1|CO455573
genomic: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCTgtaagtaatc ... ttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
EST: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCT ACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAGEST: gi|91872698|gb|EB402655.1|EB402655
genomic: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCTgtaagtaatc ... ttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
EST: TCGGAAAATTTCTCTACTTGTTCTTCAC-AGCACCATACTTGGAGTAGCT ACCGGGTTGCTTAGTGCATACATTAT
genomic: TCGGAAAATTTCTCTACTTGTTCTTCACCAGCACCATACTTGGAGTAGCTgtaagtaatc ... ttcatggcagACCGGGTTGCTTAGTGCATACATTAT
ctgatgatttgagcagggttcttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
tattcttttc CT-rich tract
ataatattcttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatcccctaccgccacttttgtgagtcgtcttatgaattctttcctgtgccaaaataatcagaaaatctactctgatgatttgagcagggttcttttgactgactgataatattcttttcatggcagACCGGGTTGCTTAGTGCATACATTATCAAGAAGCTCTGCTTTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC