1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatcctgctcgattcatctattgttttctgactacacaatgctctagtatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATGTAAGCTCAGCTTGACAC
species | Zea mays |
transcript | GRMZM2G061928_T04 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCCTTTTGA-GATT ATCAGAGGAATGAGAATAAAGAGGTTGCTGTCGATGCAATCTTTGCCTGCEST: gi|32825698|gb|CD965408.1|CD965408
genomic: AGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTC-TTT-GAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTT-GCCTGC
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|211091461|gb|FK999164.1|FK999164
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|28930839|gb|CB334200.1|CB334200
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTT-TTTGAAGAT- ATAAGAAGAATGAGAATAAAGAGGGTGCTGEST: gi|211091460|gb|FK999163.1|FK999163
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTG
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGNTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|74237956|gb|DT645870.1|DT645870
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|211270190|gb|FL112873.1|FL112873
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGGTCTTTGAAGATT ATAAGAAGA-TGAGAATAAAGNAG-TTGCTGTCGATGCATTCTTGCCTGEST: gi|211148121|gb|FK994989.1|FK994989
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAG-AGGTTGCTGTCGATGCATTCTTGCCTG
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGA-TGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|5901386|gb|AW042486.1|AW042486
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGEST: gi|32838675|gb|CD978353.1|CD978353
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCG
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGAEST: gi|5325092|gb|AI783283.1|AI783283
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
tatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATGTAAGCTCAGCTTGACAC
ttccttagc putative branch site
tatcttct putative PPT
tttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctgctcgattcatctattgttttctgactacacaatgctctagtatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCATGTAAGCTCAGCTTGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT