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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctgctcgattcatctattgttttctgactacacaatgctctagtatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT

Basic information

species Zea mays
transcript GRMZM2G061928_T03
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061928_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 3'ss of exon 7
gtatcctgctcgattcatctattgttttctgactacacaatgc-tctagtatatttgggacgatcacatccacaggtttaagcttccttagcggtat-cttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT
|||||||  | |     | ||| ||||    | | || |   | | ||||||| |      | |||     |||  | | |   |||||| |  |||  || |||| |||||||||||||| || ||||||||||| ||||||||||||||||| | ||| ||||| || |||||||||||||||||
gtatcctcatagtccgttttatggttta--aattgcatatcccatatagtatagt---attggtcatgcatacatctgttattgtccttaacaatatgtttttagACAAGAAGAATGAGAACAAGGAGGTTGCTGTTGATGCATTCTTGCCTGCCAACACTGCTCGTGACGCCATTCAGTACTCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211148121|gb|FK994989.1|FK994989
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGA-TGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5770204|gb|AI973378.1|AI973378
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|24768592|gb|CA403721.1|CA403721
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|4834930|gb|AI670156.1|AI670156
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211328726|gb|FL322907.1|FL322907
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|101401489|gb|EB822424.1|EB822424
EST:     CTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: CTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5847103|gb|AW000182.1|AW000182
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5847111|gb|AW000190.1|AW000190
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|78104561|gb|DV522979.1|DV522979
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60347915|gb|DN214888.1|DN214888
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211146692|gb|FK994974.1|FK994974
EST:     AGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCCTTTTGA-GATT                         ATCAGAGGAATGAGAATAAAGAGGTTGCTGTCGATGCAATCTTTGCCTGC
genomic: AGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTC-TTT-GAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTT-GCCTGC
EST: gi|211091461|gb|FK999164.1|FK999164
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5006060|gb|AI712122.1|AI712122
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60349652|gb|DN216625.1|DN216625
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|67012300|gb|CO441049.1|CO441049
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211402007|gb|FL112901.1|FL112901
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|7118905|gb|AW497510.1|AW497510
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|67017766|gb|CO446515.1|CO446515
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5901415|gb|AW042515.1|AW042515
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60339231|gb|DN206204.1|DN206204
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|37379431|gb|CF626460.1|CF626460
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|6865274|gb|AW360624.1|AW360624
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|28930839|gb|CB334200.1|CB334200
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTT-TTTGAAGAT-                         ATAAGAAGAATGAGAATAAAGAGGGTGCTG
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTG
EST: gi|76012232|gb|DT939402.1|DT939402
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60348025|gb|DN214998.1|DN214998
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60344717|gb|DN211690.1|DN211690
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|28873765|gb|CB329709.1|CB329709
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTTTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTTTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211091460|gb|FK999163.1|FK999163
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGNTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60343029|gb|DN210002.1|DN210002
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|32825698|gb|CD965408.1|CD965408
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|71759727|gb|DR957664.1|DR957664
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60396650|gb|DN229518.1|DN229518
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|32931451|gb|CF036263.1|CF036263
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|67012010|gb|CO440759.1|CO440759
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211270190|gb|FL112873.1|FL112873
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGGTCTTTGAAGATT                         ATAAGAAGA-TGAGAATAAAGNAG-TTGCTGTCGATGCATTCTTGCCTG
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAG-AGGTTGCTGTCGATGCATTCTTGCCTG
EST: gi|32909251|gb|CF014063.1|CF014063
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|24764070|gb|CA399239.1|CA399239
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5714350|gb|AI944335.1|AI944335
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60398608|gb|DN231424.1|DN231424
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|18177630|gb|BM378840.1|BM378840
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|67014869|gb|CO443618.1|CO443618
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|76285558|gb|DV025126.1|DV025126
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|211067607|gb|FL464883.1|FL464883
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTTTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5757339|gb|AI964626.1|AI964626
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5296191|gb|AI782871.1|AI782871
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60399757|gb|DN232567.1|DN232567
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60339839|gb|DN206812.1|DN206812
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|9953369|gb|BE639952.1|BE639952
EST:     GAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGTAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCG
genomic: GAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTG-AAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCG
EST: gi|31909407|gb|CD650903.1|CD650903
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCCTGCG
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCC-TGCG
EST: gi|60346798|gb|DN213771.1|DN213771
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|6012425|gb|AW061862.1|AW061862
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|76285559|gb|DV025127.1|DV025127
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|113701996|gb|EE679500.1|EE679500
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|37423391|gb|CF649423.1|CF649423
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|78104562|gb|DV522980.1|DV522980
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|31349858|gb|CD434215.1|CD434215
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|14243411|gb|BG841076.2|BG841076
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60348523|gb|DN215496.1|DN215496
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|29129886|gb|CB380590.1|CB380590
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|31356747|gb|CD441104.1|CD441104
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5901386|gb|AW042486.1|AW042486
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCG
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCG
EST: gi|32838675|gb|CD978353.1|CD978353
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60356641|gb|DN223614.1|DN223614
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|5325092|gb|AI783283.1|AI783283
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|37375185|gb|CF624015.1|CF624015
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|60358335|gb|DN225308.1|DN225308
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
EST: gi|213191211|gb|FM191435.1|FM191435
EST:     TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCCTTGAAGATT                         ATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA
genomic: TGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 328

ATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 301

ATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 394

ATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 309

ATAGCAGTCTGTGCTGATGATCCTGAATATCGTCACTACAACGACATCAGTGAGCTGTCTCCTCATCGCCTGCAAGAGATCAAGCGGTTCTTTGAAGATTgtatcctgct ... tatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT
 ttccttagc  putative branch site 
                                             tatcttct  putative PPT
                           tttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcctgctcgattcatctattgttttctgactacacaatgctctagtatatttgggacgatcacatccacaggtttaagcttccttagcggtatcttctagATAAGAAGAATGAGAATAAAGAGGTTGCTGTCGATGCATTCTTGCCTGCGACCACAGCTCGAGAGGCCATTCAGTACTCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG