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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccccttgcatgcacaatgccatctttgcaactagttgaatttgtttctcatatttgcccttgtctgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTGCGTAATAACTCACAGTTCCAAAACCTACTTGGTTTGGTTCAGGCTAACC

Basic information

species Zea mays
transcript GRMZM2G061620_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76012358|gb|DT939528.1|DT939528
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|7216451|gb|AW562573.1|AW562573
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGAT
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGAT
EST: gi|33103619|gb|CF063579.1|CF063579
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|32944591|gb|CF049410.1|CF049410
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|33103634|gb|CF063594.1|CF063594
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|60396214|gb|DN229083.1|DN229083
EST:     TGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: TGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|101401580|gb|EB822466.1|EB822466
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|32850730|gb|CD990411.1|CD990411
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76280698|gb|DV020266.1|DV020266
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|33104092|gb|CF064052.1|CF064052
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|78073733|gb|DV502167.1|DV502167
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|211501745|gb|FL041143.1|FL041143
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|78078954|gb|DV507366.1|DV507366
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|60355834|gb|DN222807.1|DN222807
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76280697|gb|DV020265.1|DV020265
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
EST: gi|76288771|gb|DV028339.1|DV028339
EST:     AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAA                         TCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG
genomic: AACCAGCTCAAGCTGGACCAAATGCTAACCCTCTCGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctttgcaactagttgaatttgtttctcatatttgcccttgtctgaactgtagTCTCTTCCGAATGATTCCGCTAATGCCAACACAGGAAATCTTGATGTTTTGCGTAATAACTCACAGTTCCAAAACCTACTTGGTTTGGTTCAGGCTAACC
                                     cccttgtct  CT-rich tract
                  aatttgttt  TA-rich tract