1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgaaaagcatggaccttataaattgttccgatctgaaactgcatgttttaatatttttgcgggtccttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACGTAATAGATAGATTCTTGGAAAAGGAAGTGGTTCCAAGGAAGAAGCTAC
species | Zea mays |
transcript | GRMZM2G061287_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACEST: gi|61118385|gb|DN559346.1|DN559346
genomic: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacgaaaag ... cttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
EST: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACEST: gi|32931982|gb|CF036794.1|CF036794
genomic: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacgaaaag ... cttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
EST: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACEST: gi|60394849|gb|DN227718.1|DN227718
genomic: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacgaaaag ... cttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
EST: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACEST: gi|78119998|gb|DV538382.1|DV538382
genomic: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacgaaaag ... cttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
EST: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG GTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
genomic: AAGATATAAATGCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAGgtacgaaaag ... cttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAAC
aattgttccgatctgaaactgcatgttttaatatttttgcgggtccttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACGTAATAGATAGATTCTTGGAAAAGGAAGTGGTTCCAAGGAAGAAGCTAC
ttttaat putative branch site (score: 25)
tccttttgcc putative PPT
atgttttaatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaaaagcatggaccttataaattgttccgatctgaaactgcatgttttaatatttttgcgggtccttttgccagGTTCACTACAAGTTTGAACTGATGGACGAGACGCTATTTCTTACGGTAAACGTAATAGATAGATTCTTGGAAAAGGAAGTGGTTCCAAGGAAGAAGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC