1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aagcacaagtggccttaatttatcactatcaattcattgcttacagcagtaacctgacaatgatgaaggattcaattaacagggttattttttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG
species | Zea mays |
transcript | GRMZM2G059671_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTGGCAGTAAAAATTCTAATGGAGCGGGACTTCCATCCAGAGCGTCTCEST: gi|76284241|gb|DV023809.1|DV023809
genomic: TACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: GTTCTTTTGGTACTGTGCACCGTGCGGATTGAAATGGTTCG GATGTCGCAGNTAAAA-TTCTAATGGAEST: gi|26456437|gb|CA828020.1|CA828020
genomic: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAG-TAAAAATTCTAATGGA
EST: GCGGATTGGAATGGTTCG GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCEST: gi|32839244|gb|CD978925.1|CD978925
genomic: GCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: ACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCEST: gi|32837172|gb|CD976850.1|CD976850
genomic: ACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: GGTACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTGGCAGTAAAAATTCTAATGGAGCGGGACTTCCATCCAGAGCGTCTCEST: gi|32838830|gb|CD978511.1|CD978511
genomic: GGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: TACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCEST: gi|211082601|gb|FL182313.1|FL182313
genomic: TACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
EST: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCEST: gi|32836743|gb|CD976421.1|CD976421
genomic: GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTC
EST: ACTGTGCACCGTGCGGATTGGAATGGTTCG GATGTGGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
genomic: ACTGTGCACCGTGCGGATTGGAATGGTTCGgtatgttttc ... tttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTC
gcagtaacctgacaatgatgaaggattcaattaacagggttattttttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG
ttttaac putative branch site (score: 32)
ttatttttt CT-rich tract
ttattttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcacaagtggccttaatttatcactatcaattcattgcttacagcagtaacctgacaatgatgaaggattcaattaacagggttattttttaacccagGATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA