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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcttgcctgtgccaaattggcttgttgttcataaatagtcagtcagtgtgactctcggtcccttacggcatatacatttgttctcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGACCTTGTCGCAGAGCGTGCAGCACGCCTGGCCGCCGCAGGCGTGTACAGCA

Basic information

species Zea mays
transcript GRMZM2G058745_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058745_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g44760.1 (Oryza sativa), 3'ss of exon 8
gtacggc-ttgcctgtgccaaattggcttgttgttcataaatagtcagtcagtgtgactctcggtcccttacggcatatacatttgttctcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGACCTTGTCGCAGAGCGTGCAGCACGCCTGGCCGCCGCAGGCGTGTACAGCA
||| |   || | ||  ||||| ||| |           || | |   ||| || |  |   |||  ||||     |||  ||||| |||  | |||||||| | || ||||||||||||||||| ||||| ||  ||||||| |||||| | || ||||||||||| |||||| |||| || || ||| | ||  |  
gtatgaaatttcttgacccaaagtggatacgcaacatccaacact-gttcaatgag--tactggttgcttatt---tatg-atttgatcttttattcagGTCCCAGATACTTCCCTGGAAGTAAGATACATTACCAGTCACATTTGTGACATAGTTGCAGAGCGTGCTGCACGCTTGGCTGCTGCTGGCATATATGGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211316172|gb|FL216589.1|FL216589
EST:     CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG                         GTCGCGGTCACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
genomic: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttg ... tcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
EST: gi|32943726|gb|CF048545.1|CF048545
EST:     CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG                         GTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC
genomic: CCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGGgtacggcttg ... tcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtcagtgtgactctcggtcccttacggcatatacatttgttctcatgttcagGTCGCGGACACTTCCCTGGAAGTAAGGTACATCACTCGTCACATCTGTGACCTTGTCGCAGAGCGTGCAGCACGCCTGGCCGCCGCAGGCGTGTACAGCA
                     cccttac  putative branch site (score: 3)
                                      tttgttctc  putative PPT
                               atatacattt  TA-rich tract