1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcaccagctctttctgtgccctttttatgcttattagtaagttgaaacctatgtatcaattagtacatgttcgatgaatacattcgttgtggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG
species | Zea mays |
transcript | GRMZM2G058745_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGGATGTTGTTCCACCTAAGCTGGAGCTGCCATTTATATTGAG GACGCCAGATATGGCAGCCATGCATCATGACTCCTCACATGACCTCAAAACEST: gi|116825360|gb|EC869084.1|EC869084
genomic: TGGGGATGTTGTTCCACCTAAGCTGGAGCTGCCATTTATATTGAGgtatgctttc ... ggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAAC
EST: CTATTTGGGGATGTTGTTCCACCTAAGCTGGAGCTGTCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACEST: gi|32943726|gb|CF048545.1|CF048545
genomic: CTATTTGGGGATGTTGTTCCACCTAAGCTGGAGCTGCCATTTATATTGAGgtatgctttc ... ggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAAC
EST: CTATTTGGGGATGTTGTTCCACCTAAGCTGGAGCTGCCATTTATATTGAG GACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAAC
genomic: CTATTTGGGGATGTTGTTCCACCTAAGCTGGAGCTGCCATTTATATTGAGgtatgctttc ... ggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAAC
aacctatgtatcaattagtacatgttcgatgaatacattcgttgtggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG
tatcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaccagctctttctgtgccctttttatgcttattagtaagttgaaacctatgtatcaattagtacatgttcgatgaatacattcgttgtggtatcacagGACGCCAGATATGTCAGCCATGCATCATGACTCCTCACATGACCTCAAAACTCTTGGAGCTAAACTGAAGGACATAGTCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
-caccagc
- - - - -ctttctg
- - - - - - - - tgccctt
- - - - - - - - - - - - - atgctta
- - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacatg