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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctaagtatcagtgtctcaaaatggattagtgcagtggtgtgttaaagcgaatctcatataatattttccctaatagtaagtgttgcacttgctcgcagCCGTATACCTGGGCACTGGGTTCCACCACCCCCTCCAGCTGATGAGGTTTGGGCATCTTATTTGGTGCAGCACAAGTAAATCACCATGGGTATGAGAAAT

Basic information

species Zea mays
transcript GRMZM2G058366_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058366_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g12670.1 (Oryza sativa), 3'ss of exon 8
acctaagtatcagtgt-ctcaaaatggattagtgcagtggtgtgttaaagcgaatctcatataatattttc---cctaata--gtaagtgttgcacttgctcgcagCCGTATACCTGGGCACTGGGTTCCACCACCCCCTCCAGCTGATGAGGTTTGGGCATCTTATTTGGTGCAGCACAAGT----AAATCACCATGGGTATGAGAAAT
   | |||| || ||| |||   || |  ||||||  |    ||| ||| |||||   || ||  ||| ||     ||| |  | || |||  ||| |||  ||||||| |||||||||||||||||||  |||||||||||||||||||| || |||||||| ||||| ||||||| ||| |    || | ||      ||   |    
--tttagta-cattgtgctctcgattg--tagtgctttaccatgtgaaa-cgaattctatgtagcattctcttatttaacaatgcaattgtctcacctgcctgcagCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAACTGTCCAAGTAACTCCACTTAGCTG----

upper sequence: GRMZM2G058366_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA12G05400.1 (Glycine max), 3'ss of exon 7
-acctaagtatcagtgtctcaaaatggattagtgcagtggtgtgttaaagcgaatctcatataatattttccctaatagtaagtg-ttgcacttgctcgcagCCGTATACCTGGGCACTGGGTTCCACCACCCCCTCCAGCTGATGAGGTTTGGGCATCTTATTTGGTGCAGCACAAGTAAATCACCATGGGTATGAGAAAT--
  |    ||||  || | || ||     ||  || ||||       || |  |||     ||  ||| ||   | ||  |   |  |||||  | |   |||||| ||||| ||||| |||||||  || || ||||||||| ||||| | ||||||||||| ||||||   |  || | | | |  ||  || | | ||||  
tgcaactgtattggtttttctaatgtcttttatgaagtgtgaaa--aatgaaaataaagcattttatcttatttgattttgtttccttgcaacttcatccagCCGCATACCAGGGCATTGGGTTCAGCCTCCTCCTCCAGCTAATGAGATATGGGCATCTTACTTGGTGAGACCTAAATGA-TTATTATTAGT-TAACAAATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcgaatctcatataatattttccctaatagtaagtgttgcacttgctcgcagCCGTATACCTGGGCACTGGGTTCCACCACCCCCTCCAGCTGATGAGGTTTGGGCATCTTATTTGGTGCAGCACAAGTAAATCACCATGGGTATGAGAAAT
                        ccctaat  putative branch site (score: 3)
                                            cttgctc  putative PPT
      aatctcatataatatt  TA-rich tract