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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggactgctctacactccgtcaattaatgttattctatagtagactggcattgtgacttcgtttcactaatgcagGTTAGTAGGGTTCCTTATCTCCATCTGTGTTCCCTTCCTACATGGCATTCTCGAACGTCCTCCTGGTCTCTCTGCCTGAAAGTTCCTCAGCCTATCCTGG

Basic information

species Zea mays
transcript GRMZM2G058004_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058004_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g44140.1 (Oryza sativa), 3'ss of exon 6
gtaggactgctctacactccgtcaattaatgttattctatagtagactggcattgtgacttcgtttcactaatgcagGTTAGTAGGGTTCCTTATCTCCATCTGTGTTCCCTTCCTACATGGCATTCTCGAACGTCCTCCTGGTCTCTCTGCCTGAAAGTTCCTCAGCCTATCCTGG
|||   || || ||  ||   | |    |  |  ||  || |||||     |||   | ||| ||||  || ||||||| || |||||||| ||||||||| || |||| |||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |
gtatagctcctataagcttgttgatgctacatatttgcat-gtagatcattatttaaatttcctttctgtattgcagGTCAGCAGGGTTCCATATCTCCATTTGCGTTCTCTTCCTACTTGGCATTCTCGAACTTCCTCCTGGTCTCTATGCTTGAAAGTTCCTCAGCCTATCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233775|gb|DT641689.1|DT641689
EST:     TGTCTCACAGGATATTTTCTAGCAAAGTACATTTGGAGCTTGAAAGTGTG                         GTTAGTAGGGTTCCTTATCTCCATCTGTGTTCCCTTCCTACATGGCATTCT
genomic: TGTCTCACAGGATATTTTCTAGCAAAGTACATTTGGAGCTTGAAAGTGTGgtaggactgc ... actaatgcagGTTAGTAGGGTTCCTTATCTCCATCTGTGTTCCCTTCCTACATGGCATTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattaatgttattctatagtagactggcattgtgacttcgtttcactaatgcagGTTAGTAGGGTTCCTTATCTCCATCTGTGTTCCCTTCCTACATGGCATTCTCGAACGTCCTCCTGGTCTCTCTGCCTGAAAGTTCCTCAGCCTATCCTGG
                                            cactaat  putative branch site (score: 2)
                                         tttcact  CT-rich tract
     aatgttattctata  TA-rich tract