1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatctgattgacgcactacattcataaacaatagcaatctaatgcaatatttcgaagcatgacatctgcactttttttggtttgtttctttgatgttcagGATGAAGAATCATCATCCCACATATTTGATGATATTGATGCATCTGCCACTATTCAAACCAATAGCGTTAGACAGCCAACATCTGATTACCTTCCAGATA
species | Zea mays |
transcript | GRMZM2G056773_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GACAGTCAATATTGTTCCCAAGGGATTTGCTGGGATGCTCATCAACAATG GATGAAGAATCATCATCCCACATATTTGATGATATTGATGCATCTGCCACT
genomic: GACAGTCAATATTGTTCCCAAGG-ATTTGCTGGGATGTTCATCAACAATGgtacataagt ... tgatgttcagGATGAAGAATCATCATCCCACATATTTGATGATATTGATGCATCTGCCACT
aatatttcgaagcatgacatctgcactttttttggtttgtttctttgatgttcagGATGAAGAATCATCATCCCACATATTTGATGATATTGATGCATCTGCCACTATTCAAACCAATAGCGTTAGACAGCCAACATCTGATTACCTTCCAGATA
ctttgat putative branch site (score: 57)
ctttttttggtttgtt CT-rich tract
acttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatctgattgacgcactacattcataaacaatagcaatctaatgcaatatttcgaagcatgacatctgcactttttttggtttgtttctttgatgttcagGATGAAGAATCATCATCCCACATATTTGATGATATTGATGCATCTGCCACTATTCAAACCAATAGCGTTAGACAGCCAACATCTGATTACCTTCCAGATA
- -ctgattg
- - - - - - - - -acattca
- - - - - - - - - - - - - aacaata
- - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttct