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gtaattcttgctcttataattactgatctattgcattctcactgatttaactctgtagcagaagattactctgatattttattcttaaactaatcatttatgattttttttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA
species | Zea mays |
transcript | GRMZM2G056393_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACEST: gi|67019503|gb|CO448252.1|CO448252
genomic: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
EST: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACEST: gi|91874831|gb|EB404788.1|EB404788
genomic: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
EST: CATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACEST: gi|32931849|gb|CF036661.1|CF036661
genomic: CATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
EST: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACEST: gi|118406757|gb|EH038205.1|EH038205
genomic: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
EST: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACEST: gi|67017174|gb|CO445923.1|CO445923
genomic: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
EST: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAG AATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
genomic: TTAGCATTTAAGCTAGAGGAAGGTCGTTTTGGTCAGCTGACCTATCTAAGgtaattcttg ... ttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATAC
attactctgatattttattcttaaactaatcatttatgattttttttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA
aactaat putative branch site (score: 2)
tttatgattttttttc putative PPT
atattttattcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttgctcttataattactgatctattgcattctcactgatttaactctgtagcagaagattactctgatattttattcttaaactaatcatttatgattttttttctttccagAATCTATGACGGCGTTATACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA