1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acagacgtcatttgatttatcatctgttttggcatgtctcttcctgaatcgcaataatatactcacatatttctcatatccttattaatagtttcaccagGTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGTTCTGTCTAAAGCCTTGTGGGTCTGAAGCTAGCATATTAGAGGATTTATC
species | Zea mays |
transcript | GRMZM2G055917_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTGCCATCTATATGCCGCATCTCTGCTGCTCTTCAGTATAATTTTG GTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGTEST: gi|78112546|gb|DV530940.1|DV530940
genomic: TGCTGTGCCATCTATATGCCGCATCTCTGCTGCTCTTCAGTATAATTTTGgtatgttcag ... gtttcaccagGTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGT
EST: TGCTGTGCCATCTATATGCCGCATCTCTGCTGCTCTTCAGTATAATTTTG GTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGT
genomic: TGCTGTGCCATCTATATGCCGCATCTCTGCTGCTCTTCAGTATAATTTTGgtatgttcag ... gtttcaccagGTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGT
gaatcgcaataatatactcacatatttctcatatccttattaatagtttcaccagGTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGTTCTGTCTAAAGCCTTGTGGGTCTGAAGCTAGCATATTAGAGGATTTATC
tttcacc CT-rich tract
atatccttattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagacgtcatttgatttatcatctgttttggcatgtctcttcctgaatcgcaataatatactcacatatttctcatatccttattaatagtttcaccagGTACAGAAGGCACAGATTTTGGCTTGGCTTCAGTATTAAATTCACTGGAGTTCTGTCTAAAGCCTTGTGGGTCTGAAGCTAGCATATTAGAGGATTTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -tcatttg
- - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - -gcatgtc
- - - - - - - - - - - - - - - - - - - - - -ctgaatc