1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accctatttggactttgcacccgtgtgtactgtatctgggcatgcattgaaaatgatatcctttgcttgtatttgtaaccattccatgttttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG
species | Zea mays |
transcript | GRMZM2G055520_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGEST: gi|6445442|gb|AW179360.1|AW179360
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGEST: gi|51592768|gb|CV071914.1|CV071914
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGEST: gi|6445422|gb|AW179490.1|AW179490
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGEST: gi|76286686|gb|DV026254.1|DV026254
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGEST: gi|101389744|gb|EB816806.1|EB816806
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
EST: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGG GCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
genomic: AGCAGTACAACAAACTTGAGAGACCCGTACGTGATGAATGTGAATCTCGGgtgagttctg ... ttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAG
attgaaaatgatatcctttgcttgtatttgtaaccattccatgttttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG
ttgtaac putative branch site (score: 2)
tgttttc putative PPT
aaatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accctatttggactttgcacccgtgtgtactgtatctgggcatgcattgaaaatgatatcctttgcttgtatttgtaaccattccatgttttcatggcagGCCGTGATGAAAAGTTTTAGTGTAAGTGGTTCAGACCCTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - ctttgca
- - - - - - - - - - ccgtgtg
- - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - gaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattcc