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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAACCATTTGTTCTCCACTCAGAAAGGCCTGCACTGGTATGGATCTTTCAG

Basic information

species Zea mays
transcript GRMZM2G054634_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054634_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 3'ss of exon 7
gtgactagctgcaacacctttttcctgttgttcaccccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAACCATTTGTTCTCCACTCAGAAAGGCCTGCACTGGTATGGATCTTTCAG
|| | || ||  |   ||||||  | | || | |      |||||||| | | || ||| ||| |||| ||   || |||   |  |||| |||||||||||||| ||||||||||||||||||||  | ||  ||||||| |||  |||||| ||  | ||||||||  | |||||||| ||| |||
gtaaataacttgacagccttttgtcggctgctaatgttt-ttcattgcatttggtaacaccatttatttcttatatcaatcattctagGTAGCATCACATGTGTTGATGGGTATTACAAAAGCCACGGCGGTGTTGCCAACTATTCTTTCTCCCCTTGGGAAGGCCTGTTCCGGTATGGACCTTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248037|gb|DY619823.1|DY619823
EST:     ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG                         GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
EST: gi|211485328|gb|FL295172.1|FL295172
EST:     ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG                         GTTGCATCACATGTGTTCATGGGTATTA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTA
EST: gi|71439297|gb|DR820347.1|DR820347
EST:     ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG                         GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCA
EST: gi|32930139|gb|CF034951.1|CF034951
EST:     ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAG                         GTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTA
genomic: ACATAAAGTATCTTCTGTCTTCTGTTGGTCCTCTTCAGAATCAAAAGGAGgtgactagct ... attcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accccccttcattgcttctagtgacatcatctattcctgtgatgaattcatgcagGTTGCATCACATGTGTTCATGGGTATTACAAAAGCCACATCAGTACTGCCAACCATTTGTTCTCCACTCAGAAAGGCCTGCACTGGTATGGATCTTTCAG
                            atctatt  TA-rich tract