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...ctaggatctattagctaaatcaaaagggtttggacccaaatcctctatccaaggagtggtctactgacatgtttatatttctgctcgttttaaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAT
species | Zea mays |
transcript | GRMZM2G054109_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAG GGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTEST: gi|211080474|gb|FK973123.1|FK973123
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAGgttagtgtct ... taaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
EST: TTGCCGATGATCAGTTCATNTCAGCTGAAAATCTTACAGACAATCAAAAG GGCTATGCTGATGCEST: gi|211080473|gb|FK973122.1|FK973122
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAGgttagtgtct ... taaactgcagGGCTATGCTGATGC
EST: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAG GGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTEST: gi|211080475|gb|FK973124.1|FK973124
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAGgttagtgtct ... taaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
EST: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAG GGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
genomic: TTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAGgttagtgtct ... taaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTT
tatccaaggagtggtctactgacatgtttatatttctgctcgttttaaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAT
tactgac putative branch site (score: 61)
tttctgctcgtttt putative PPT
acatgtttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaggatctattagctaaatcaaaagggtttggacccaaatcctctatccaaggagtggtctactgacatgtttatatttctgctcgttttaaactgcagGGCTATGCTGATGCATTGGTAAAGAAAGCATATGAGGACTGGATGCAAGTTGTAGAATATGATGGCAAGGCACTCTTGAGCTTCAAGCAGAAAAAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - -acccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgct