Sequence
atgc intronic sequence ATGC exonic sequencegtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G053676_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g01710.3 (Oryza sativa), 3'ss of exon 5
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtaca-tttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
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gtacatcaaatcac-ccaaaatttatgaactttgaaaggg----------ttgtgcagttcatacaat------tctgatatgccttcgatttt-tcagTTGTGCTATGTGGATCCTGGAATTGCTAGTTCAGAAGAAATGGAGCAGCTGAAAACTATTGATAGTATCCTGGTCAGGTTCTAGAATGCTG
upper sequence: GRMZM2G053676_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g01710.4 (Oryza sativa), 3'ss of exon 5
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtaca-tttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG---------
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gtacatcaaatcac-ccaaaatttatgaactttgaaaggg----------ttgtgcagttcatacaat------tctgatatgccttcgatttt-tcagTTGTGCTATGTGGATCCTGGAATTGCTAGTTCAGAAGAAATGGAGCAGCTGAAAACTATTGATAGTATCCTGGTCAGGTTCTAGAATGCTGGTGCGTACA
upper sequence: GRMZM2G053676_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA06G14440.1 (Glycine max), 3'ss of exon 3
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgt-acatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
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-------------gtcttacttcttttaacaaatgttaaaatttacaattgcattgcaccaataatgattaggattgatggtattgtttctgtt-tcagTTGTGTTATGTTGATCCTGGAATCGCTAGTGAGGAGGAGATGGAAAAACTCAAGACAATTGATAGTGTCTTCCTTGAATTT----------
upper sequence: GRMZM2G053676_T02 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA02G38520.1 (Glycine max), 3'ss of exon 3
gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
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------------gtttt----tcttttaaccgaagtttgta---attgccttgtaacattgtataatgag--acttgatggtcttgtttctatttcagTTGTGTTATGTTGATCCTGGAATTGCCAGTGAGGAGGAGATGGAAAAACTCAAGACAATTGATAGCGTCTTCCTTGAATTTTAA-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76016485|gb|DT943655.1|DT943655EST: AGCGTCTGGTGAAGAGAGGTGTCCACACGCTCAGGAAGCCACAGTATCAG TTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTG
genomic: AGCGTCTGGTGAAGAGAGGTGTCCACACGCTCAGGAAGCCACAGTATCAGgtacatcaaa ... atgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
tacatttatacaatac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtacatcaaatggctccaaagtatatgaactgaagaaggcatacatgaatttgtacatttatacaatacattatctggtgtacatgtcatgttatcagTTATGTTATGTGGATCCTGGAATTGCTAGTTCAGAAGAGATGGAGCAACTGAAGACTATTGATAGTATGCTTGTCAGGTTTTAGGTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA