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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttgctccttccttttcacattttgcaatttttacaaaacgaattcatctttagcctcactttcccatgacaacagGACATTACATTGGGAGTTGCGATAGGGTCATCAACACAGATCTCCATGTTTGTG

Basic information

species Zea mays
transcript GRMZM2G053004_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 3'ss of exon 7
--------gtaatttttgctccttccttttcacattt-tgcaatttttacaaaacgaattcatctttagcctcactttcccatgacaacagGACATTACATTGGGAGTTGCGATAGGGTCATCAACACAGATCTCCATGTTTGTG
          ||    | ||  |||  | |    | | ||  | |  |     |     | || ||||  |||||   || ||  ||| |||| |||||| | |||||||| ||||| || ||||||||||||||||||||||||
gtaaggaaccaaaggatactatttcaatatggtttatatgttaatcgtgtgctatcttcttatttttaatctcac---cctattccaa-agGATATTACACTTGGAGTTGCCATAGGATCGTCAACACAGATCTCCATGTTTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcaatttttacaaaacgaattcatctttagcctcactttcccatgacaacagGACATTACATTGGGAGTTGCGATAGGGTCATCAACACAGATCTCCATGTTTGTG
                                gcctcac  putative branch site (score: 3)
                                 cctcactttcccat  CT-rich tract
     aatttttacaaaa  TA-rich tract