1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaataatattttattatgttcagctaatgtccttactgtgcatgtatatccggtgtcacttcattcttacaaacaaaaatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
species | Zea mays |
transcript | GRMZM2G052926_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGCTGCTGCCAACTAGATATTCAATATTCAAAEST: gi|67014377|gb|CO443126.1|CO443126
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGCTGCTGCCAACTAGATATTCAATATTCAAAEST: gi|31358368|gb|CD442725.1|CD442725
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGCTGCTGCCAACTAGATATTCAATATTCAAAEST: gi|78087001|gb|DV515394.1|DV515394
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAAEST: gi|31250253|gb|CD219277.1|CD219277
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTGGGTTCTTTGCAT GGAAGGAACATATACGATGGTTGCTGCCAACTAEST: gi|78080905|gb|DV509317.1|DV509317
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAAEST: gi|32943654|gb|CF048473.1|CF048473
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
EST: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCAT GGAAGGAACATATACGATGGCTGCTGCCAACTAGATATTCAATATTCAAA
genomic: TTCAGTATCACTCGCGCCAAGAAGCTGTGGAAGCATTTGGTTCTTTGCATgtaataatat ... aatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
ttactgtgcatgtatatccggtgtcacttcattcttacaaacaaaaatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
ttcttac putative branch site (score: 106)
ttacaaacaaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatattttattatgttcagctaatgtccttactgtgcatgtatatccggtgtcacttcattcttacaaacaaaaatatcccagGGAAGGAACATATACGATGGTTGCTGCCAACTAGATATTCAATATTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC