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...cagttatgctggcaatagcatgatttgattcagcaataattcttgttattgtttttgggaatgtgccacagtatatgaagcatgttttgctgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGCATGGTAGCTTCACGTTGGACTGGAGAAAGTGTAAGTGAGGTTAGTAAAG
species | Zea mays |
transcript | GRMZM2G052875_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAG GATCATAGCTCTGACAATCCTGAGGGTTTATCAAGGGAAGAGTTAGGTCGCEST: gi|211310066|gb|FL216070.1|FL216070
genomic: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAGgttatacatt ... tgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGC
EST: TTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAG GATCATAGCTCTGACAATCCTGAGGGTTTATCAAGGGAAGAGTTAGGTCGCEST: gi|211310069|gb|FL216073.1|FL216073
genomic: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAGgttatacatt ... tgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGC
EST: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAG GATCATAGCTCTGACAATCCTGAGGGTTTATCAAGGGAAGAGTTAGGTCGCEST: gi|211310065|gb|FL216069.1|FL216069
genomic: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAGgttatacatt ... tgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGC
EST: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAG GATCATAGCTCTGACAATCCTGAGGGTTTATCAAGGGAAGAGTTAGGTCGCEST: gi|211310068|gb|FL216072.1|FL216072
genomic: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAGgttatacatt ... tgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGC
EST: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAG GATCATAGCTCTGACAATCCTGAGGGTTTATCAAGGGAAGAGTTAGGTCGC
genomic: CTTTAGATGAATTGCTGCACAAGGAGTCTGCAGTACCTACATTAGAGAAGgttatacatt ... tgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGC
ttattgtttttgggaatgtgccacagtatatgaagcatgttttgctgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGCATGGTAGCTTCACGTTGGACTGGAGAAAGTGTAAGTGAGGTTAGTAAAG
ttttgct CT-rich tract
tatatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttatgctggcaatagcatgatttgattcagcaataattcttgttattgtttttgggaatgtgccacagtatatgaagcatgttttgctgaatttcagGATCATAGCTCTGACAATCCTGAGGGTTTATCAAGAGAAGAGTTAGGTCGCATGGTAGCTTCACGTTGGACTGGAGAAAGTGTAAGTGAGGTTAGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA