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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctccctaattcatcttgataattagctcttgtagaattaaatgaaaacttgattttattttaaacattttgcagcaggaatcataaatatggattttgtgttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCCATTTGTCAAGTAGAGTTAAAGCCAAACCAAGGTATATCTGTACATGAA

Basic information

species Zea mays
transcript GRMZM2G052699_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052699_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g35910.1 (Oryza sativa), 3'ss of exon 7
gttggctccctaattcatcttgataattagctcttgtagaattaaatgaaaacttgattttattttaaacattttgcagcaggaatcataaatatggattttgtgttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCCATTTGTCAAGTAGAGTTAAAGCCAAACCAAGGTATATCTGTACATGAA
          | |   || ||   |||| |    || |   |  | || || | || | | ||   ||||||  || |  | |  |  || ||| |  |||| |  | | | |||| ||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||  ||||| ||||| |||||||||
--------gttgaa--atttttggaattcgaaactggactttctattgcaatcctg-tctgatc--aaacatcctg-aatatgtttgttacata-gttttttctaatcactacagGTTGGATTCCGAATACCCAGTTCGAAATATGTTCAAGCTCTTCATATGTGCCATTTGCCAAGTGGAGTTAAAACCAAGTCAAGGGATATCCGTACATGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023575|gb|CO452324.1|CO452324
EST:     GATAACGTGGAGGAAAT-TTTGAGGATGGGTGTGCGCTTCTTTCTAGACG                         GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: gi|31356932|gb|CD441289.1|CD441289
EST:     GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG                         GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: gi|32800093|gb|CD952329.1|CD952329
EST:     GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG                         GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: gi|71432148|gb|DR813198.1|DR813198
EST:     GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG                         GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
EST: gi|71435075|gb|DR816125.1|DR816125
EST:     GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACG                         GCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC
genomic: GATAACGTGGAGGAAATATTTGAGGATGGGTGTGCGCTTCTTTCTAGACGgttggctccc ... ttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttaaacattttgcagcaggaatcataaatatggattttgtgttgaatgcagGCTGGATTCTGAATACCCTGTTCGAAATATGTTCAAACTGTTCATATGTGCCATTTGTCAAGTAGAGTTAAAGCCAAACCAAGGTATATCTGTACATGAA
                           ataaatatggatttt  TA-rich tract