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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgaagtctttttgggacggagggagtacatgtgcatggatgcattctgcaacttctagctaccaatgagaggcaactaatgtattgaaactgattacagGTCCTTAATTACAAGACTCAACAGAGCAGACTCTTTCCATTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGATTGGCTCAACTGGCTATATACGG

Basic information

species Zea mays
transcript GRMZM2G052389_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052389_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os06g01390.1 (Oryza sativa), 3'ss of exon 7
-----gtgaagtctttttgggacggagggagtacatgtgcatggatgcattctgcaacttctagctaccaatgagaggcaactaatgtattgaaactgattacagGTCCTTAATTACAAGACTCAACAGAGCAGACTCTTTCCATTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGATTGGCTCAACTGGCTATATACGG
      |     |||| |    |  |  || |  |  || ||  | |  ||    ||||| | ||||||||||| | |   ||||||   |  || || ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| || ||||
ttaatatttgtactttgttcatctaaaagaattaaattg-ataaacgagttt---aactttttgctaccaatgacaagtggctaatggtctataa-tggttacagGTCCTCAATTACAAGACTCAGCAAAGCAGACTCTTTCCTTTGCTGGCTTCAGCTTATGCATTTAGGTTTGTGGGTGAGTGGCTGAAGTGGCTGTACACGG

upper sequence: GRMZM2G052389_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA01G41600.1 (Glycine max), 3'ss of exon 7
------------------------------------------------------------gtgaagtcttt-ttgggacggaggga---gtacatgtgcatggatgcattctgcaacttctagctaccaatgagaggcaactaatgtattgaaactgattacagGTCCTTAATTACAAGACTCAACAGAGCAGACTCTTTCCATTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGATTGGCTCAACTGGCTATATACGG
                                                             |||| ||  | ||  ||   |  ||   ||  |  |  |   ||   || |      | |   |   | ||    |    || |||   |    |   |  ||||  || ||||||| || || |||   || ||||| |||||||||||||| || ||||| || ||||||||||| || ||||| || ||||| |||| ||
gtaatgggaggtgtgataagatccctcctcatctggtttattaaatataattgtatgatgttgaattccgtatttagatctattgactggtcaaaataaaaaaattggttttaattagtttcattctaagtgtagcgtgcttattgtgcggtttttccatttagGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCATTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGCGAGTGGCTGAAATGGCTTTATATGG

upper sequence: GRMZM2G052389_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtgaagtctttttgggacggagggagtacatgtgcatggatgcattctgcaacttctagctaccaatgagaggcaactaatg-------tattgaaactgattacagGTCCTTAATTACAAGACTCAACAGAGCAGACTCTTTCCATTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGATTGGCTCAACTGGCTATATACGG
    ||   | | |||      | |||  || | ||    |  ||    ||  |  |||||   ||  ||| | || |||||       | || |    |  |  ||||  || ||||||| ||||| || || || |||||||| ||||||||||| || ||||| || |||||||| ||| | ||| | || |||||||||| ||
---gagatatctagggttttctgcagtggattttcaaaattaaat----cacttcttagctctaaagaagatgtaattaatggattttctgtttacttggtctttagGTGATTGATTACAAAACTCAGCAAAGTAGGCTCTTTCCTTTGCTGGCTTCTGCCTATGCTTTCAGATTTGTTGGTCAGTGGTTGAAATGGCTATATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcaacttctagctaccaatgagaggcaactaatgtattgaaactgattacagGTCCTTAATTACAAGACTCAACAGAGCAGACTCTTTCCATTGCTGGCTTCAGCATATGCATTTAGATTTGTGGGTGATTGGCTCAACTGGCTATATACGG
                                taatgtatt  TA-rich tract