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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagtattgagcactgagcgcgtgtccttgttttttggcggtgaagagaaattgatcacaagtatgtaacagcacttaatgatggatggatggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGAGCGGGCGACCTGTTCGCGAGCGGGTTCCTGTACGGGCTGGTGAAGGGGT

Basic information

species Zea mays
transcript GRMZM2G051842_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051842_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g01620.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------tcaagtattgagcactga-gcgcgtgtccttgttttttggcggtgaagagaaattgatcacaagtatgtaacagcacttaatgatggatggatggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGAGCGGGCGACCTGTTCGCGAGCGGGTTCCTGTACGGGCTGGTGAAGGGGT
                                                                                       | | | || |  ||  |  | |  ||   |  |||   |   ||      ||   ||   |   | ||| |        | |||   ||  |   |||||||| ||||||||| |||| | ||||||||| || ||||||||| | || || ||||| || ||||| ||||||||||||||||||||| ||||||| ||| 
gtgagatcaaggttattgtgatgtactacaatagcaatgttatttgggatgttattgtgatgcatactagtatttgatacacatgcatgatgcatggttcagagttgagaatggtttcctttgcagtttgtttgagcaacaagaaggcggctttgttaacatgtaaagtgaaaaataaa---atgcagGTGGTTCAAGTGGCGGCAACCGGGGAGAGTAATGCGGTGGACGCGACGGGGGCGGGGGATCTGTTTGCGAGCGGGTTCCTGTACGGGTTGGTGAAAGGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29576892|gb|CB617004.1|CB617004
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|149079176|gb|EE168123.2|EE168123
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|18179998|gb|BM381208.1|BM381208
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|60338856|gb|DN205829.1|DN205829
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|211429772|gb|FL436587.1|FL436587
EST:     CTGTGGTCACASTTGCTTCAAAGGGATGCATGGCAAMGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|29543849|gb|CB604229.1|CB604229
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|31612067|gb|CD568689.1|CD568689
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|29945521|gb|CB815681.1|CB815681
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|29945789|gb|CB815820.1|CB815820
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|31911174|gb|CD651792.1|CD651792
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|148928772|gb|EC873535.2|EC873535
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|71762333|gb|DR960270.1|DR960270
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|28873361|gb|CB329360.1|CB329360
EST:     TTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: TTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|78105422|gb|DV523840.1|DV523840
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|211123067|gb|FL031406.1|FL031406
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|29543893|gb|CB604273.1|CB604273
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|71771408|gb|DR969345.1|DR969345
EST:     TGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: TGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|78103938|gb|DV522356.1|DV522356
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|101385265|gb|EB814678.1|EB814678
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
EST: gi|30032244|gb|CB834095.1|CB834095
EST:     CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAG                         GTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA
genomic: CTGTGGTCACACTTGCTTCAAAGGGATGCATGGCAAAGCATGGCAAACAGgtgagtttta ... atggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagaaattgatcacaagtatgtaacagcacttaatgatggatggatggatgcagGTCGTTCAAGTGCCGGCCATCGGGGAGAGCAACGCGGTGGACACAACTGGAGCGGGCGACCTGTTCGCGAGCGGGTTCCTGTACGGGCTGGTGAAGGGGT
                               ttaatgat  TA-rich tract