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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagtcgcttgtttattattccgagttgcaatattattggtcgttgaagcacaaatattcatagagatttcctgcatggcatgattctgaatgctttctcttctgtgtactgccagGATTTGTTTTCTGTCCCTCCAGCATATATATTTGGAGCCATTCTGCCTGCTTTTATGGTTGCAGGACTTTACTTCTTTGATCACAGCGTAGCTTCACAGT

Basic information

species Zea mays
transcript GRMZM2G051753_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g08020.1 (Oryza sativa), 3'ss of exon 7
gtaataagtc--gcttgtttattattccg-agttgc-aatattattggtcgttgaagcacaaatattcatagagatt-tcctgcatggcatgattctgaatgctttctcttctgtgtactgccagGATTTGTTTTCTGTCCCTCCAGCATATATATTTGGAGCCATTCTGCCTGCTTTTATGGTTGCAGGACTTTACTTCTTTGATCACAGCGTAGCTTCACAGT
||||| ||||   |||| || | || | | || ||  ||||||  ||||| |  |      ||  |||  | || || |  |||||||||| |||   |||   ||||||| | | || |  |||||| ||||||| || ||||||||||| |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
gtaattagtcaaacttgcttgtgatactggagatgtgaatatttatggtcttcaattttagaagtttcgcacagcttattttgcatggcatcattaataatatcttctctttttt-tattttcagGATCTGTTTTCAGTTCCTCCAGCATACATATTTGCTGCCATTCTGCCGGCTTTGATGGTTGCAGGACTTTACTTCTTTGATCATAGCGTGGCTTCACAAT

upper sequence: GRMZM2G051753_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv09s0002g05810.t01 (Vitis vinifera), 3'ss of exon 7
gtaataagtcgcttgtttattattccgagttgcaatattattggtcgttgaagcacaaatattcatagagatttcctgcatggcatgattctgaatgctttctcttctgtgtactgccagGATTTGTTTTCTGTCCCTCCAGCATATATATTTGGAGCCATTCTGCCTGCTTTTATGGTTGCAGGACTTTACTTCTTTGATCACAGCGTAGCTTCACAGT
                   | ||      ||| ||  || ||     |        |    |   |   | ||| |    |    | |     ||||||| |   |      | | | ||||| ||     ||||||||||||||| || ||||  |||||| | |||||||| ||| | || || ||||| ||||| |||||||| || ||||||||| 
------------------gtaatggtagtttgtaaatttgttcactctgttcatctagccttaactttcggttttcattgtatactcaaaacaaatgctt-caaatacacaaattac-agGATATGGGCAATGTCCCTCCAGCATACATCTTTGCTGCCATTATTCCTGCTTTGATGATAGCCGGGCTTTATTTCTTCGATCACAGTGTTGCTTCACAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagatttcctgcatggcatgattctgaatgctttctcttctgtgtactgccagGATTTGTTTTCTGTCCCTCCAGCATATATATTTGGAGCCATTCTGCCTGCTTTTATGGTTGCAGGACTTTACTTCTTTGATCACAGCGTAGCTTCACAGT
                                ctttctcttctgtgt  CT-rich tract