Sequence
atgc intronic sequence ATGC exonic sequence...agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g35630.1 (Oryza sativa), 3'ss of exon 7
agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttt-tgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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aatatatat-catatgatctttctgggatattttacttctaagcaaatcagaacttacatggacgtcttttgatacttttgtgaaatgttgatatatttagATTGTCAATGTCCCTGAGAAAGGAGCAAGGAAGCATCCTCGCGGTGATAATATACAG
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA20G35600.1 (Glycine max), 3'ss of exon 7
agtttgtct-tcattgggggtataacaa-aaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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-ttttacaaatcactaaaggtttctgaacaaataattctttgtaggagagtta-gtgccatctaattgtatccttaacttggaatgatttctttttgtctagATGGTAAACGTTCCTGAGAGAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAG
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G28260.1 (Glycine max), 3'ss of exon 8
---agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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cattgattatttgtgttgaatattttgaagagataggggttaaattggt-tatcgtcattcatacagtatc--ctaaacttggaatgatttcttattgtctagATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGAATCCACGGGGGGATAACATTCAG
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G32040.1 (Glycine max), 3'ss of exon 4
agtttgtct-tcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatt-tatttttccttttgaa--attatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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-ttttacaaatcactaaatgtttctgaaaaa--ataattcgttgtaggagagt-tagagccatctaatagtatccttaacttggaatgatttctttttgtctagATAGTAAATGTTCCTGAGAAAGGAGCGTGGAAGCATCCACGGG--------------
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA16G33080.1 (Glycine max), 3'ss of exon 8
----agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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gcattgattctttgtgttgaatgttttgaagagatagggctaaattggttattgccattcatacagtagcctaaacttggaat----gatttcttattgtctagATAGTAAATGTTCCTGAGAAAGGAGCTAGGAAGCATCCACGGGGGGATAACATTCAG
upper sequence: GRMZM2G050186_T05 (Zea mays), 3'ss of exon 7
lower sequence: Vv18s0089g01240.t01 (Vitis vinifera), 3'ss of exon 7
---agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
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aatggattatcttgcttttgaaatcagccatgcctgttatataacc---attggatcatcgtttgttggtgtcctgaacgtataatgtttttgtcttctccagATAGTGAATGTTCCTGAGAAGGGAGCGAGGAAGCATCCTCGGGGTGATAATATTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9028559|gb|BE238554.1|BE238554EST: TATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACG ATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAAT
genomic: TATCTGGTGAAGGTGTTCAGCAGGCATTGCTGAAAATGCTGGAAGGCACGgtaaggcaca ... gcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
tatataaatgttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttgtcttcattgggggtataacaaaaattataacttgtttcatatttctatataaatgttttatttatttttccttttgaaattatggcatgcttagATAGTCAACGTTCCTGAGAAAGGAGCAAGGAAGCATCCTCGTGGTGATAATATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA