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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttagtagtgaaaatattattaatgttttttgtagtttttttatccctctatccatgctaaacataacctaccatgtcccttcagCAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAG

Basic information

species Zea mays
transcript GRMZM2G049190_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049190_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 3'ss of exon 7
gtttagtagtgaaaatattattaatgttttttgtagtttttttatccctctatccatgctaaacataacctaccatgtcccttcagCAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAG
||| |  | | || |||  ||  || ||| ||       ||| || |||  ||||||  ||| | ||   | || |||| |||||||||| ||| | ||||||||||| || ||||| ||||||||||| || ||| |||||| ||||| ||||||||||||  | | ||||||
gttaaacaattaagataa-atctatatttctt-----catttcattccttcatccatcataaccgtagttt-ccttgtctcttcagCAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211405764|gb|FL399268.1|FL399268
EST:     TCCTTCGGTAGCTATTGCTGAAGACTTCGAAACCGCTAAAGTAGTACCAG                         CAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATA
genomic: TCCTTCGGTAGCTATTGCTGAAGACTTCGAAACCGCTAAAGTAGTACCAGgtttagtagt ... gtcccttcagCAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATA
EST: gi|71300882|gb|DR786472.1|DR786472
EST:     TCCTTCGGTAGCTATTGCTGAAGACTTCGAAACCGCTAAAGTAGTACCAG                         CAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATA
genomic: TCCTTCGGTAGCTATTGCTGAAGACTTCGAAACCGCTAAAGTAGTACCAGgtttagtagt ... gtcccttcagCAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtttttttatccctctatccatgctaaacataacctaccatgtcccttcagCAAACAGAATACGGCTTTGGAATAAGGGTGTAGATTCTGAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAG
                                            tgtcccttc  CT-rich tract
     tttttttat  TA-rich tract