1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacttcctctctgtgttactaaagatgctatctcaccgtatgcacatattcattttaattctgtttttgcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTATGACATGGAGAGATTCCAGCTATTCAAGCATTTGCAGTTTGAATGGCCA
species | Zea mays |
transcript | GRMZM2G048045_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAG TGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTAEST: gi|60344231|gb|DN211204.1|DN211204
genomic: TATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAGgtaacttcct ... gcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTA
EST: GCGGTTGAGATATTTAATACCTCTAG TGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTAEST: gi|71320210|gb|DR796860.1|DR796860
genomic: GCGGTTGAGATATTTAATACCTCTAGgtaacttcct ... gcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTA
EST: TATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAG TGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTA
genomic: TATGATGATAATGCTATTACAAATGCGGTTGAGATATTTAATACCTCTAGgtaacttcct ... gcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTA
gatgctatctcaccgtatgcacatattcattttaattctgtttttgcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTATGACATGGAGAGATTCCAGCTATTCAAGCATTTGCAGTTTGAATGGCCA
ttttaat putative branch site (score: 236)
tttttgc putative PPT
atattcattttaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttcctctctgtgttactaaagatgctatctcaccgtatgcacatattcattttaattctgtttttgcacccccagTGGCGCTGTTCACTTCATCGCATCAAATAACGATTCTGGTGTGAGATACTATGACATGGAGAGATTCCAGCTATTCAAGCATTTGCAGTTTGAATGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA