1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttcaaaagctggtacctggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttatagcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG
species | Zea mays |
transcript | GRMZM2G047867_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGEST: gi|5895598|gb|AW036844.1|AW036844
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGEST: gi|88757916|gb|DY542057.1|DY542057
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGEST: gi|5791184|gb|AI977976.1|AI977976
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGEST: gi|88757557|gb|DY541698.1|DY541698
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCACCCGAAGGAAAATATGATGCTATTATTGEST: gi|5847488|gb|AW000567.1|AW000567
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
EST: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATG CTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
genomic: CTTATCCATTGGATTCAAAGATCCTCGTGTCCGACTTCATGTTGGTGATGgtatgttcaa ... ttttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTG
gtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG
tcttgat putative branch site (score: 154)
ctatttttt putative PPT
tatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcaaaagctggtacctggtggtactttatatgactgtgacaggctgtaggatatgccactattgtttatagcctcaggcactttgtttctgctggtcttgatctcttatagttcatagtatacttgctattttttgcagCTGTTGATTTCCTGAGGAATTCTCCCGAAGGAAAATATGATGCTATTATTGTAGATTCATCAGATCCAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA