1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtgagtcatatccttctattttatgttgcttgtatgtggtggttgttggggacctttgaaggtgatgtctgaataattatgttttgtgcttgttcatgtcaattttgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTGGCCGCTTTGATGAATCTGAGAGCATATACAGATCCCTGCTTTTTATGA
species | Zea mays |
transcript | GRMZM2G047093_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTEST: gi|32930286|gb|CF035098.1|CF035098
genomic: GAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTEST: gi|31349081|gb|CD433438.1|CD433438
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCCTGAAGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTCGTTCAAACTTEST: gi|18654934|gb|BM499739.1|BM499739
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGNCTTGTTCAAACTTEST: gi|76013182|gb|DT940352.1|DT940352
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGGTCAAACTTEST: gi|18963330|gb|BM660374.1|BM660374
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTEST: gi|32933101|gb|CF037913.1|CF037913
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTEST: gi|32943122|gb|CF047941.1|CF047941
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTEST: gi|18661955|gb|BM501667.1|BM501667
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCEST: gi|33095320|gb|CF055314.1|CF055314
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCC
EST: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATT GTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
genomic: GGATGCTAGACAGAGCCCTTGAGGAAATGCAGAAGAAGGAGAGCAAAATTgtgagtcata ... tgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTT
ggtgatgtctgaataattatgttttgtgcttgttcatgtcaattttgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTGGCCGCTTTGATGAATCTGAGAGCATATACAGATCCCTGCTTTTTATGA
ttttgtct CT-rich tract
tgaataattatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcatatccttctattttatgttgcttgtatgtggtggttgttggggacctttgaaggtgatgtctgaataattatgttttgtgcttgttcatgtcaattttgtctgctagGTTGACAAGCTATCATTCAAAGAACAAATGGCATCCGTCTTGTTCAAACTTGGCCGCTTTGATGAATCTGAGAGCATATACAGATCCCTGCTTTTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA