1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttctttgtttcttccaaactgaactgtatgattgcctaacaaacaaaacggtaaagttgaataacgttataataattttattatttctcgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG
species | Zea mays |
transcript | GRMZM2G046686_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCGTATTAAG TACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGTEST: gi|149098511|gb|EE184491.2|EE184491
genomic: TTTCGTATTAAGgtacttgtat ... cgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGT
EST: GATTTATTTGGTCCATCTGTGAATTGCTTATCCACCCCTTTCGTATTAAG TACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGTEST: gi|148969508|gb|EE020330.2|EE020330
genomic: GATTTATTTGGTCCATCTGTGAATTGCTTATCCACCCCTTTCGTATTAAGgtacttgtat ... cgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGT
EST: GATTTATTTGGTCCATCTGTGAATTGCTTATCCACCCCTTTCGTATTAAG TACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGT
genomic: GATTTATTTGGTCCATCTGTGAATTGCTTATCCACCCCTTTCGTATTAAGgtacttgtat ... cgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGT
caaaacggtaaagttgaataacgttataataattttattatttctcgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG
gaataac putative branch site (score: 33)
ttttattatttctc putative PPT
taaagttgaataacgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttctttgtttcttccaaactgaactgtatgattgcctaacaaacaaaacggtaaagttgaataacgttataataattttattatttctcgtgatccagTACACCTTCTCTCGCTACTATTCGTGAGGATGATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -tgtttct
- - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - aaacaaa