1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtactttatggttatattcttttcaatgaaaatcacttgcatttttttgtacacccagttttaaatacctggtttcttaaaaaaacttcctgtgcccattgtgtaagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCTATGTAAGATGCTAAAATGGAGAAGAAAAGTTAGAGAAGATAAAGCAGTC
species | Zea mays |
transcript | GRMZM2G045366_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGATCTTGAGCCTTC TAACATATTGAGGGATGACACCGGACATCTGAAGGTGGCAGATTTTGATTTEST: gi|211486462|gb|FL339896.1|FL339896
genomic: TTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGATCTTGAACCTTCgtgagtactt ... aagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCT
EST: TGCATGAGCATAAACCTCAGGCTATCATCCATGCGTGATCTTGAACCTTC TAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCTEST: gi|76287394|gb|DV026962.1|DV026962
genomic: TGCATGAGCATAAACCTCAGGCTATCATCCAT-CGTGATCTTGAACCTTCgtgagtactt ... aagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCT
EST: TTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGATCTTGAACCTTC TAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCTEST: gi|74234286|gb|DT642200.1|DT642200
genomic: TTGCATGAGCATAAACCTCAGGCTATCATCCATCGTGATCTTGAACCTTCgtgagtactt ... aagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCT
EST: CATAAACCTCAGGCTATCATCCATCGTGATCTTGAACCTTC TAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCT
genomic: CATAAACCTCAGGCTATCATCCATCGTGATCTTGAACCTTCgtgagtactt ... aagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCT
tttaaatacctggtttcttaaaaaaacttcctgtgcccattgtgtaagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCTATGTAAGATGCTAAAATGGAGAAGAAAAGTTAGAGAAGATAAAGCAGTC
tttcttaaaaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactttatggttatattcttttcaatgaaaatcacttgcatttttttgtacacccagttttaaatacctggtttcttaaaaaaacttcctgtgcccattgtgtaagataacagTAACATATTGAGGGATGACACTGGACATCTGAAGGTGGCAGATTTTGATCTATGTAAGATGCTAAAATGGAGAAGAAAAGTTAGAGAAGATAAAGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA