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gtacaccaatagactgcttctatgctgttgggacatgatatctattctaagtactaatttcacactttttatgctacatctagctttgttgctttacatgatttgcgcaatgacagttctcaatattaacatggtaccattctgcttctttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTACAACATCCTTTCTTCAAT
species | Zea mays |
transcript | GRMZM2G045241_T07 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTAEST: gi|78081455|gb|DV509867.1|DV509867
genomic: TATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
EST: GGAGCTTATTCTTAATGCTTCATTTGAAGCAATCGATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTAEST: gi|78117446|gb|DV535833.1|DV535833
genomic: GGAGCTTATTCCTAATGCTTCATCTGAAGCAATCGATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
EST: ATTTGATCCAG CAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
genomic: ATTTGATCCAGgtacaccaat ... tttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTA
tgcgcaatgacagttctcaatattaacatggtaccattctgcttctttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTACAACATCCTTTCTTCAAT
tattaac putative branch site (score: 1)
ccattctgcttctttt putative PPT
aatattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaccaatagactgcttctatgctgttgggacatgatatctattctaagtactaatttcacactttttatgctacatctagctttgttgctttacatgatttgcgcaatgacagttctcaatattaacatggtaccattctgcttctttttgttagCAACTTTGTTCCTGGGATCCTCGAAGGAGGCCAACTGCTGAGCAAGCATTACAACATCCTTTCTTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG