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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttaggttaatcatattataattatgatatatgactattacctttttctgaaaacttctttagctggttgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG

Basic information

species Zea mays
transcript GRMZM2G044819_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044819_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g14810.1 (Oryza sativa), 3'ss of exon 8
gtactcttaggtta--atcatattataattatga--------tatatgactattacctttttctgaaaacttctttagctggttgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG
||| | |  ||||   || |     ||  |||||        |||||||  | ||  ||  ||| |||| ||||||||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||| ||||| |||||||||||||| |||||||| |||
gtaatgtctggttgtcattactcattagatatgacaatactctatatgatcaata--ttggtctaaaaaattctttagctggttgaaatgtagAGTGAGATAATGGCTGAGCCGGAACGATTTGTAGAGCCTGATCCTGAACTGCCTTTAGCTCTTCTGGATCAAAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32937883|gb|CF042702.1|CF042702
EST:     GCTGTTTCCGAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
genomic: GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
EST: gi|32833943|gb|CD973621.1|CD973621
EST:     ATGCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
genomic: ATGCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTT
EST: gi|17970200|gb|BM276964.1|BM276964
EST:     GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG                         AGAGAAATAATGGCTGAGCCTGATCCGGTT-GTAGAGCCTGATCCAGAACT
genomic: GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag ... tgaaatgtagAGAGAAATAATGGCTGAGCCTGATC-GGTTTGTAGAGCCTGATCCAGAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatatatgactattacctttttctgaaaacttctttagctggttgaaatgtagAGAGAAATAATGGCTGAGCCTGATCGGTTTGTAGAGCCTGATCCAGAACTTCCTTTAGCTCTTCTTGATCAAAAAGAG
          actatta  TA-rich tract