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...ttttcattttgacagagtcttttttttaatatatactgagcaaaaaaaaacaaatgctaagttgtggcattcttgttgtccatgctgtggatgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
species | Zea mays |
transcript | GRMZM2G044629_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTEST: gi|40337292|gb|CK371362.1|CK371362
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCT
EST: TTCCATGCGTTTCTGCCGATGGTAGTTTTATTATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGEST: gi|149014175|gb|EE043721.2|EE043721
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGEST: gi|148958334|gb|EC904558.2|EC904558
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGEST: gi|32941368|gb|CF046187.1|CF046187
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGEST: gi|148982619|gb|EE028417.2|EE028417
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGCAEST: gi|37397991|gb|CF636304.1|CF636304
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCA
EST: ATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTGEST: gi|149014877|gb|EE044588.2|EE044588
genomic: ATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGEST: gi|148943648|gb|EC888712.2|EC888712
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGG GTAGCAAAGGCTCCTGATGGNCA-CGGTGGAGTTTATGCTGEST: gi|71757247|gb|DR955184.1|DR955184
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGG-CAACGGTGGAGTTTATGCTG
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTEST: gi|31354041|gb|CD438398.1|CD438398
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGT
EST: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACAGCATATAGG GTAGCAAAGGCTCCTGATGGCAACGGTGGA
genomic: TTCCATGCGTTTCTGCCGATGGTAGATTTATTATGGAGACACCATATAGGgtactacagt ... atgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcattttgacagagtcttttttttaatatatactgagcaaaaaaaaacaaatgctaagttgtggcattcttgttgtccatgctgtggatgaaaccagGTAGCAAAGGCTCCTGATGGCAACGGTGGAGTTTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG