1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaacaagcttgttttgtcaaaatggggtgttggattccagaagcatccaaaactttagatcatgatgccatgcctaacatttggtttccaatgaatgcagGCTTAATTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAATCTGGCCAAGGCATATCCATACACGAG
species | Zea mays |
transcript | GRMZM2G044382_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGATTTAGAGGAGGTCTTTGAGGACGGATGCCCATCCCTTTCAAGGAG GCTTAATTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTGCEST: gi|148971591|gb|EE022307.2|EE022307
genomic: AGATTTAGAGGAGGTCTTTGAGGACGGATGCCCATCCCTTTCAAGGAGgtctgtaccc ... atgaatgcagGCTTAATTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTGC
EST: CCATCCCTTTCAAGGAG GC-TAATTTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTG
genomic: CCATCCCTTTCAAGGAGgtctgtaccc ... atgaatgcagGCTTAA-TTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTG
tccaaaactttagatcatgatgccatgcctaacatttggtttccaatgaatgcagGCTTAATTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAATCTGGCCAAGGCATATCCATACACGAG
gcctaac putative branch site (score: 70)
taacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacaagcttgttttgtcaaaatggggtgttggattccagaagcatccaaaactttagatcatgatgccatgcctaacatttggtttccaatgaatgcagGCTTAATTCTGAGTATCCTGTCCGAGACATGTTCAAACTTTTTGCATGTGCAATTTGTCAAATTGACTTGGAATCTGGCCAAGGCATATCCATACACGAG
aaacaag
- - - - -tgttttg
- - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatttg