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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtggctctttcctactgaacttggtctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044348_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------gtcggtggctctttcctactgaacttggtctttgttaat-accattttcagttagttccat-atgcttcagctgatctcgctttgcttggttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG
                                            ||   ||| ||  |  || |   ||  ||  |  ||||| |  |  || | ||   |  || || ||  |  | ||  |  ||   ||   | | | |||||| |||| ||||| || ||  |||  |||||||| ||||||||||| ||||||||||||||||| ||||
gtcagttatccaggtcaactgagatattaatcctggatattctggtttttggttcaatt-tatttcgctctgttgtaattaatcattaagtttaatttactttattattctaaatgtaataacagttcaatt--ctttttgcagCTTTTGTTCCCAACAGCTGATTCTGCCCGGCCATTTTCCATGCTTGGACTTGGTGACATTGTAATCCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149027787|gb|EE154597.2|EE154597
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|94475589|gb|EB704547.1|EB704547
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|7137682|gb|AW499217.1|AW499217
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|148944600|gb|EC889730.2|EC889730
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTG
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTG
EST: gi|149100816|gb|EE186910.2|EE186910
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|148943972|gb|EC889053.2|EC889053
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
EST: gi|71426478|gb|DR807528.1|DR807528
EST:     TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAG                         CTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT
genomic: TCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggct ... ttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacagCTTCTGTTTCCAACTGCAGACGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG
                        agctgat  putative branch site (score: 4)
                                             ttatgta  TA-rich tract