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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacacttgcatgttttagctctttatcccttttccataaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAG

Basic information

species Zea mays
transcript GRMZM2G044317_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 7
gtatgtacacttgcatgttttagctcttta-tcccttttccat-------aaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAG
|||| | ||   |  | ||||| ||||| | | || | ||||        ||||  |  |||  |  |   | || || |||| | | ||   |||||  |||||| ||||| ||||||||||| |||||||||||  |||| || ||||||||||||||||| ||||||||||| || ||||| |||
gtatttgcatcagtttattttacctcttcaattccatatccagtagaaaaaaattgttcgtgtgattacccagtctaaataaaccttgttcgtatccatgtaagGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661200|gb|BM501285.1|BM501285
EST:     CAGTGTTGAGCATGTGTTCTTCAAG                         GTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTT
genomic: CAGTGTTGAGCATGTGTTCTTCAAGgtatgtacac ... tccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAG
                 aattaat  putative branch site (score: 3)
              aaaaattaattccaag  TA-rich tract