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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacacttgcatgttttagctctttatcccttttccataaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAGGTTTGCCGTTAAC

Basic information

species Zea mays
transcript GRMZM2G044317_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 7
gtatgtacacttgcatgttttagctcttta-tcccttttccat-------aaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAGGTTTGCCGTTAAC
|||| | ||   |  | ||||| ||||| | | || | ||||        ||||  |  |||  |  |   | || || |||| | | ||   |||||  |||||| ||||| ||||||||||| |||||||||||  |||| || ||||||||||||||||| ||||||||||| || ||||| |||             
gtatttgcatcagtttattttacctcttcaattccatatccagtagaaaaaaattgttcgtgtgattacccagtctaaataaaccttgttcgtatccatgtaagGTGCCTTTTGAAGAAGTTCCAGATCTTGTTGCCAGCCGCCGAGTATTTCTTTCAAAAGGATATGCTTATGTTGCGATGAGTCAG-------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatcttctgtgcaaaaattaattccaagtaaaacatattgtaatccaattaagGTACCTTTCGAAGAAGTTCCTGATCTTGTTGCTGGCCGTCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCCATGAGCCAGGTTTGCCGTTAAC
                 aattaat  putative branch site (score: 3)
              aaaaattaattccaag  TA-rich tract