Sequence
atgc intronic sequence ATGC exonic sequencegtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 8
--------gtttgagtctcttggtttacttattg---ttatttccttagattttat---tgtcatatttttttttttgttcaaaa-ctagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
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gtttgactttcttagcctcgtattattctcattaggtttatttggtttgacattatctttgttcttatcatctctttattgaaaagttagATTGGAGGAGTGCCTATCAAAATAGGAGGAATGGCCAAAGGTTCTGGGATGATTCATCCAAATATGGCAACAATGCTTGGT
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 8
-------------------------gtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaa-aactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
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ccaaaagttataggactaatttaaaatacaaacctacaacttgactgat-atgatagctttccataattctgttaagctttccatgttgggtgttggttagGTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG
upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 9
------------------------gtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaa-aactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
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taacatgcttggttcattcccaaattctatatctgtttgctaatttgaagattgagaacaaagatagataatcttattattattgttgggtgttggttagATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76917242|gb|DV166726.1|DV166726EST: GCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: GCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttattgttatttccttagattttattgtcatatttttttttttgttcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
tatttttttttttgtt CT-rich tract
ttatttccttagattt TA-rich tract