1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cacacaaaccactgtccactgagtacttgtgtattcgtgttgctgtcaatcttgatagtacgtccgcggcgaattcttaacaatatgttttcaccaccagGCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGCTGCTGCTGATCCAGTTTTTGATGCCGGATAACGACACACGTCGGCAGGC
species | Zea mays |
transcript | GRMZM2G044180_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAG GCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGCEST: gi|31997749|gb|CD661755.1|CD661755
genomic: GCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAGgtataatagt ... tcaccaccagGCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGC
EST: GCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAG GCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGC
genomic: GCTGTTACACGCCCTCCGAACTTATCTATTGTATCTGAATATATTCCAAGgtataatagt ... tcaccaccagGCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGC
tcaatcttgatagtacgtccgcggcgaattcttaacaatatgttttcaccaccagGCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGCTGCTGCTGATCCAGTTTTTGATGCCGGATAACGACACACGTCGGCAGGC
tcttaac putative branch site (score: 4)
ttttcacc putative PPT
aattcttaacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacaaaccactgtccactgagtacttgtgtattcgtgttgctgtcaatcttgatagtacgtccgcggcgaattcttaacaatatgttttcaccaccagGCGGCGACCAGAATATGCATCAGGCGGGAGGAATGGGGCGGTCGCTGGAGCTGCTGCTGATCCAGTTTTTGATGCCGGATAACGACACACGTCGGCAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-acacaaa
- - - - ccactgt
- - - - - - - -ccactga
- - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata