1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatttcctaccagtattgtatttggtaccctcatcatcatttcattgctttctggcagtatattttgttcatctgatggttttacatgttacaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTG
species | Zea mays |
transcript | GRMZM2G044092_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAG GCTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGCGAATGTACAGAGEST: gi|67011065|gb|CO439814.1|CO439814
genomic: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAGgtccgtttta ... acaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAG
EST: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAG GCTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGEST: gi|71772492|gb|DR970424.1|DR970424
genomic: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAGgtccgtttta ... acaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAG
EST: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAG GGTGCACAAGGTGGTGAAGTAGGGGTGGTTGTTGATTGTGAATGGGCAGAG
genomic: AAATCTTGGCTCATGCTGCTGCTGTTGATGTTTATAGAAGAAAATTCAAGgtccgtttta ... acaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAG
tgctttctggcagtatattttgttcatctgatggttttacatgttacaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTG
atctgat putative branch site (score: 140)
tatattttgttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttcctaccagtattgtatttggtaccctcatcatcatttcattgctttctggcagtatattttgttcatctgatggttttacatgttacaaaaatagGTTGCACAAGGTGGTGAAGTAGGGTTGGTTGTTGATTGTGAATGGGCAGAGCCATTTTCTGAAAATGTGGAAGACCAAATTGCTGCACAGCGGAGGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -cctacca
- - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtt