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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaacccagccacttctcttcagtccttttttttttcaatacaagagcagagtcgtttggtagtaagaagctgtttgtctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAGGGGGTCTGCTTTCCTCTAATCT

Basic information

species Zea mays
transcript GRMZM2G044004_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211185322|gb|FL304176.1|FL304176
EST:     TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG                         GTTTTCTCCTGGGCATGAAGCCATTGGGCTG
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTG
EST: gi|211185320|gb|FL304174.1|FL304174
EST:     TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG                         GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAGCAAGGGGAG
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAG
EST: gi|4681019|gb|AI629689.1|AI629689
EST:     TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG                         GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAG
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAG
EST: gi|211185319|gb|FL304173.1|FL304173
EST:     TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG                         GTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGA
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGA
EST: gi|211185321|gb|FL304175.1|FL304175
EST:     TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAG                         GTTTTCTCCTGGGCATGAAGCCATTGGG-TGTGAA
genomic: TCCACCATGGAGCTGCCCCCGTACAGCTCTTGCTTCTTCCAGGCGCCCAGgtagaaaccc ... ctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcaatacaagagcagagtcgtttggtagtaagaagctgtttgtctttcatcagGTTTTCTCCTGGGCATGAAGCCATTGGGCTGTGAATACAGAACAAGGGGAGGGGGTCTGCTTTCCTCTAATCT
                                        tttgtctttc  CT-rich tract