1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttgactttcaccatgacagcagtatgctttcacatgctgtgttggtttattctatggttacccttatttgcaggtttcccttgcgtctcatttggttacccttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG
species | Zea mays |
transcript | GRMZM2G043983_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGTA- GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|149065576|gb|EE286698.2|EE286698
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|211255903|gb|FL358694.1|FL358694
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|76280767|gb|DV020335.1|DV020335
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|113702734|gb|EE680238.1|EE680238
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|32867645|gb|CF007327.1|CF007327
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|78025625|gb|DV494012.1|DV494012
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTEST: gi|76016907|gb|DT944077.1|DT944077
genomic: CCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
EST: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAG GTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
genomic: CAAGCACTGGAATAGTTGCCTTAAGTTATGTCCAGAAGATTTCTGAGAAGgttgactttc ... ttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACT
gttacccttatttgcaggtttcccttgcgtctcatttggttacccttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG
cccttattt CT-rich tract
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgactttcaccatgacagcagtatgctttcacatgctgtgttggtttattctatggttacccttatttgcaggtttcccttgcgtctcatttggttacccttatttgcagGTTTCCCTTGCGTCTGATTTCATGTATAACCATATGTCAAGAGACGTAACTTCCAGCTTTGGTTACGATTACTTGCTTAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA