1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtaattgtccataccgatattattaagttttttcaagtatttactgtgtgctttcgtgcgtgtggggaacattagccatactgtttggcgtctgcatctttcagctgcacatatcaatgtcatttacattttaccattctgataatatgttttcaacagTCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTTAAACTCACTGGATTTCTCAAGGAGTTGATGCAGCGGAGAAA
species | Zea mays |
transcript | GRMZM2G043862_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCA TCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAGEST: gi|211322504|gb|FL455349.1|FL455349
genomic: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCAgtaagtaatt ... ttttcaacagTCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAG
EST: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCA TCTTTCAAGGTAGGGTAATGTATGEST: gi|32826199|gb|CD965877.1|CD965877
genomic: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCAgtaagtaatt ... ttttcaacagTCTTTCAAGGTAGGGTAATGTATG
EST: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCA TCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAG
genomic: CTCTGGTATTGTTGTGCACATTGGATTCAATACGACTTCTGTTGTTCCCAgtaagtaatt ... ttttcaacagTCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAG
ctgcacatatcaatgtcatttacattttaccattctgataatatgttttcaacagTCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTTAAACTCACTGGATTTCTCAAGGAGTTGATGCAGCGGAGAAA
ttctgat putative branch site (score: 115)
tgttttc putative PPT
ataatatgttttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaattgtccataccgatattattaagttttttcaagtatttactgtgtgctttcgtgcgtgtggggaacattagccatactgtttggcgtctgcatctttcagctgcacatatcaatgtcatttacattttaccattctgataatatgttttcaacagTCTTTCAAGGTAGGGTAATGTATGAGATAGGTGTTGAAACTGTGGGGCAAGGTGCCCTTAAACTCACTGGATTTCTCAAGGAGTTGATGCAGCGGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA