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gtgagcacaccttttgattcttcgtctcaaagcttttactcagttttgcagttagttattatttctgaatttctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTGGTGAAGAGTTAGAGAAGAAAATTCTGTCAACTATTCCTTTAG
species | Zea mays |
transcript | GRMZM2G043602_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAAT GCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTEST: gi|50322350|gb|CO517476.1|CO517476
genomic: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAATgtgagcacac ... ctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
EST: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAAT GCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTEST: gi|149008910|gb|EE041128.2|EE041128
genomic: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAATgtgagcacac ... ctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
EST: GGAGTATGCCAGCAGAAATATTAAT GCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTEST: gi|74240280|gb|DT648194.1|DT648194
genomic: GGAGTATGCCAGCAGAAATATTAATgtgagcacac ... ctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
EST: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAAT GCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTEST: gi|50332234|gb|CO527360.1|CO527360
genomic: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAATgtgagcacac ... ctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
EST: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAAT GCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
genomic: TTGGGTTCACAAAAACAGTTGCTAGGGAGTATGCCAGCAGAAATATTAATgtgagcacac ... ctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTT
caaagcttttactcagttttgcagttagttattatttctgaatttctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTGGTGAAGAGTTAGAGAAGAAAATTCTGTCAACTATTCCTTTAG
tttctctgc CT-rich tract
ttagttattatttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcacaccttttgattcttcgtctcaaagcttttactcagttttgcagttagttattatttctgaatttctctgcatagGCAAACGTTATCGCTCCTGGATTTATTGCTTCAGATATGACTGCTGAACTTGGTGAAGAGTTAGAGAAGAAAATTCTGTCAACTATTCCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA