1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agcgggtacaaatttggagcctgcatagccaactgacatacttcactaaatgtaatacgtttggttttgagttctaagcattggagtcacgtatctacagGATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG
species | Zea mays |
transcript | GRMZM2G040613_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGCCTATTGAAGACATCATCCCATGGACAATATAAAACTTTCCGGCAG GATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACGEST: gi|71325071|gb|DR799220.1|DR799220
genomic: AAGGCCTATTGAAGACATCATCCCATGGACAATATAAAACTTTCCGGCAGgtttattacc ... gtatctacagGATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACG
EST: AAGGCCTATTGAAGACATCATCCCATGGACAATATAAAACTTT-C--C-G GATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACG
genomic: AAGGCCTATTGAAGACATCATCCCATGGACAATATAAAACTTTCCGGCAGgtttattacc ... gtatctacagGATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACG
ctaaatgtaatacgtttggttttgagttctaagcattggagtcacgtatctacagGATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG
cactaaa putative branch site (score: 2)
tgtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcgggtacaaatttggagcctgcatagccaactgacatacttcactaaatgtaatacgtttggttttgagttctaagcattggagtcacgtatctacagGATTGCGGTCCATGTACAACAAATGAACTGTTCTCTGTTCTTCCGTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -gtacaaa
- - - - - - - - - gcctgca