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...ttcctatatctgatagaatcagcactgtaaacacacagtctgccatataatctatttgaggtctcaaacgttcatccatgtttcttgctctttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCTAATGTTGTGTTGACCACCAAGGGAATTGACGATATGTCCTTGAAG
species | Zea mays |
transcript | GRMZM2G039263_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|211239408|gb|FL328610.1|FL328610
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|33104341|gb|CF064301.1|CF064301
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|211157236|gb|FL334269.1|FL334269
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: AAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|211149768|gb|FL359580.1|FL359580
genomic: AAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|67021395|gb|CO450144.1|CO450144
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|7238110|gb|AW573332.1|AW573332
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|211195400|gb|FL324707.1|FL324707
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|60343155|gb|DN210128.1|DN210128
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|33102590|gb|CF062550.1|CF062550
genomic: GTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|31440979|gb|CD510410.1|CD510410
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCEST: gi|61119168|gb|DN560129.1|DN560129
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
EST: GTCCAAGTTCTTGTAGCTGATCCAAGGGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
genomic: GTCCAAGTTCTTGTAACTGATCCAAGGGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGC
tataatctatttgaggtctcaaacgttcatccatgtttcttgctctttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCTAATGTTGTGTTGACCACCAAGGGAATTGACGATATGTCCTTGAAG
ttcatccatgtttctt CT-rich tract
tctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctatatctgatagaatcagcactgtaaacacacagtctgccatataatctatttgaggtctcaaacgttcatccatgtttcttgctctttttctcagAGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCTAATGTTGTGTTGACCACCAAGGGAATTGACGATATGTCCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - tcagcac
- - - - - - - - - - - - - - aaacaca
- - - - - - - - - - - - - - - - - - - tctgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccatg