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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccaaagcatgtttgatgcgagccagctgttgggtttatttactccttgtatgaccattagtaaaagggaaaactgacgtttctgcttacctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAATAAGTATGCTATAAAGCGTTCTGTCTTGATGGGAACTGTTGGGCTGTA

Basic information

species Zea mays
transcript GRMZM2G039106_T03
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6465660|gb|AW191119.1|AW191119
EST:     TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT                         GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
EST: gi|83278980|gb|DV942988.1|DV942988
EST:     TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT                         GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
EST: gi|83278211|gb|DV942219.1|DV942219
EST:     TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT                         GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgtatgaccattagtaaaagggaaaactgacgtttctgcttacctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAATAAGTATGCTATAAAGCGTTCTGTCTTGATGGGAACTGTTGGGCTGTA
                                       tgcttac  putative branch site (score: 2)
                                             cctgtttc  CT-rich tract
            attagtaaaa  TA-rich tract