1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttccaaagcatgtttgatgcgagccagctgttgggtttatttactccttgtatgaccattagtaaaagggaaaactgacgtttctgcttacctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAATAAGTATGCTATAAAGCGTTCTGTCTTGATGGGAACTGTTGGGCTGTA
species | Zea mays |
transcript | GRMZM2G039106_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAEST: gi|33770727|gb|CF273021.1|CF273021
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
EST: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAEST: gi|213187588|gb|FM189421.1|FM189421
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
EST: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAEST: gi|60399038|gb|DN231854.1|DN231854
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
EST: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTT GATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
genomic: TGGCCGCTGCAATGAATGTGAAGTGAAGGTTCGGAAGCCATATTTGTCTTgtaagtgttc ... cctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAA
ccttgtatgaccattagtaaaagggaaaactgacgtttctgcttacctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAATAAGTATGCTATAAAGCGTTCTGTCTTGATGGGAACTGTTGGGCTGTA
tgcttac putative branch site (score: 35)
cctgtttc CT-rich tract
attagtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaaagcatgtttgatgcgagccagctgttgggtttatttactccttgtatgaccattagtaaaagggaaaactgacgtttctgcttacctgtttcagGATTTTCCTTAGTCCTGGAGTAACCCGGCTGTCATTTGCCTTGTGTCGAAAATAAGTATGCTATAAAGCGTTCTGTCTTGATGGGAACTGTTGGGCTGTA
- - -aagcatg
- - - - - - tttgatg
- - - - - - - - - - - - - gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgct