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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaattaggtttggctttcatagttttttaatggttctgtttgtgtcattataatatatttcttagaatttatctttattttatcctttttcacctttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTC

Basic information

species Zea mays
transcript GRMZM2G038848_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g35170.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------gaattaggtttg-gctttcatagttttttaatggttctgtt-tgtgtcattataatatatttctta--gaatttat-ctttattttatcctttttcacct-ttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTC
                                                                                       |  ||   | || || ||     ||  | |    ||  ||| ||| |||||| | ||| ||| ||   ||| | || || | |    | ||| |     | |||||   || |||||||||||||| || ||| ||   |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||||||| ||||
gttttcctggctacctgtccctacatacttgtttagttattggtgttggttatgcacttctactatttataagatctttagttctcagcgttgtttatgagcatttgcttttagtaagatcttaagttatgtatcattaaattatgtttgtttatgaactcatactctgtggcttgcttctctgtttattcagCAAGAGGCTGTGTATGGTTTAACTGAAGTTCTTCGAGATGAAATAAGAAATGCACGACTTGTTGCAAATCCAGGATGTTATCCCACATCTATTCAGCTTC

upper sequence: GRMZM2G038848_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g42110.1 (Oryza sativa), 3'ss of exon 7
gaattaggtttggctttcatagttttttaatggttctgtttgtgtcattataatatatttcttagaatttatctt---tattttatcctttttcacct-ttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTC
 |     || |   | ||||| |||   | |  ||   |||||||||||||  | | ||| |  ||| |||| |    |||  | |  ||||     | || ||   |||||||||||||| ||||| ||| ||   ||  |||| ||||| |||||||| || || |||||||| || |||||||||||||||||||||||||
-acacctgtattcatatcataatttc--agttatttattttgtgtcattatgtt-tgtttatatgaacttatttcctatatggtttatttttctgtttatttagCAAGAAGCTGTGTATGGCTTGACTGAAGTTCTTCGCAATGAAATAAGGAATGCACGGCTTGTTGCAAATCCGGGATGTTATCCCACATCTATTCAACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71448245|gb|DR829295.1|DR829295
EST:     ATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAG                         GGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAAT
genomic: ATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAGgtttcgtact ... cacctttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAAT
EST: gi|67010559|gb|CO439308.1|CO439308
EST:     ATGAGTATGCTGAGTGGTATGGACATTCCCACATGGCACCGGAACTTCAG                         GGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAAT
genomic: ATGAGTATGCTGAGTGGTATGGACATTCCCACAGGGCACCGGAACTTCAGgtttcgtact ... cacctttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattataatatatttcttagaatttatctttattttatcctttttcacctttcagGGGGAAGCTGTGTATGGTTTGACCGAACTTAAACGAGATGACATAAGAAATGCACGCCTGGTAGCAAATCCAGGGTGTTATCCCACATCTATTCAACTTC
                      tttatctttattttat  CT-rich tract
     taatatatttcttaga  TA-rich tract